10 20
30 40
50 60 70
80 90 100 110 120
....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|
structures
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Arabidopsis thaliana MPRKPRHR-----------------VPEILWRLFGNRARNLNDAIVDLIPN-RNIQPEQCRCRGQGCLGCSSDKP-AFLLRSDDPIHYRKLLHRCFVVLHEQT----PPLLDFSPTSWWS
Phragmipedium longifolium -------------------------------------------------------------------------------DDEADPTEYRNLLARSFCYVPPSA--PPPPLLLTP--CGHT
Scilla peruviana MVRKRKRPEESTNQSSRKRRRKRGRPPEVLDRALNGRACPLEETILSLLPRPLPASPSECRCRG---AACLGCRGRRHLARGDDPPEYKTLLREVYCFVPPSA--LLPPGVFHR--VGWS
Hosta rectifolia MARKRK-----------------CRVPEVLRRAFDGCARSIEDTILSLLPNPPPSSPEECRCRG---RLCLGCLGHSHLVEQNDPPEYARLLSHTYCFVPQSA--PPPPEVFLA--CGLG
Oryza sativa
MPRRRRRR----------RAAPGGQVPPELRLAYGARALTLGRTVFSLLPSPRHCESPCPACRGRVASGCLACRRWEHLLRDGDPIAYRRLITRAVCAIAADDLSAPPPPRYTPGNSGHS
Zea mays
MARRRRR-------------VFRGRVPPDLHRAYGALARTLGHAVLSLIPPPTQAGTPCSACRGRGGAGCLACRRWEYLLRDGDPVAYRSLITRAVCAVAPSG-SATPPPLYTPGNGGHS
Ostreococcus tauri ------------------------------------------MELVEDMCAKSGRAVPVLRCAGDEPAYAETLLRRTYAFEAESAPSISGRVGEIGELNAALDVVRVAIERSFR-ASANP
130 140 150 160 170 180 190 200 210 220 230 240
....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|
structures
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|---------------Motif~T2-------------------------|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Arabidopsis thaliana QREIVERIIEMMQSG--CDCQNVICARYDKYDQSSPILELLTSSSWEFLLKRVGHDVMVYLLQQTSIFLPLLGKK---HQQVSGPPLCIKHKRTLSVHENKRKRDDNVQPPTKRQWLS--
Phragmipedium longifolium QRKVVRNTVEKLMSDPKS-RVNLLCIGYDEQSRFSSNGEALCTHAWDILLERIGDRLMVFLLEHSSIFLYLTNRS---YQQVTGPPLSEMLEG------CTRKRRRVNYEEKVEKFPSVA
Scilla peruviana QRQIVRHVMEFQ-------NSNVLCTGYSEHSRFSSIGEALCTHSWDLLLDRIGDNLMTFLLRFSYVFLPLTNKI---YQQVAGPFLNEMLQG------HSVKRQRINYDKKQEK-----
Hosta rectifolia QRKIVRNTMELLLDNSKS-NTNVLCLGYDKQRRFSSTGEAVCTHAWDLLLERIGDQLMVFLLRFSSIFLPLSNKS---YHQVTGPPLSEILQG------QRRKRQRVDYEEKPKKSFYTP
Oryza sativa
QARLVREMMKSIVADQSHGTKNVLCNGLHEGGQSICISDLVSSSSWSILLHRIGDLLMCYLLRCTSIFLPVKKND---YFQVSGVPLNVVLRNPIFASTVARKHQPQTTKAKCHTCYLWK
Zea mays
QAKLVGVAIKLMMMDRACTTTNVLSSGCRAGGQTTCVIELVSSSSWDILLHRIGDLLMCYILRHSSIFLPVKKNV---FFQVTGLPLNDFLQKPMFAS-AAKNQQPQSTKGK-YLCYLCQ
Ostreococcus tauri QNVLCKGMCRRLERGR---DAALRGSAEVSVRCETSAYAAFKSPIWDTFCERAGVEVMIHVLLFCSVFVRVGIDRDSPLLQICGYPINNAMRKRAVSKALATSKDRAIARREARARKRQR
250 260 270 280 290 300 310 320 330 340 350 360
....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|
structures
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|--NL-like~signal----|~~~~~~~~~~~~~~~~
Arabidopsis thaliana ---------------------------------SAVDDCPKDDSATITPIVG----------------------EDVDQHREKKTTKRSRIYLKRRRKQRKVNFKKVDCNAPCITPSTNG
Phragmipedium longifolium G----------------------------CTSVCDNHDDAIQSSATTVGSRS-----------------------YLACGFHRKSRKHKRLFSRHRVRKHKKLLLEPVGPSASDRSRKVL
Scilla peruviana ----------------------------------LSCNCAIQPTG-TDGLPT-----------------------TSMNSFKGKFKKRTRLFSWQRRRKLK-------------------
Hosta rectifolia EVCTLGYNNVIMSENLPSSHSQELYMERLVSPNSHTDNGAIESSG-TDGVRK-----------------------TSICSFQSNSRKRTRLFRWQRGRKHKKLLKPVV-PNTSDVSTKEC
Oryza sativa
SA----------NMAENLSICHDSSNSGVNSSFSSTCKIVTQQSCETCGSIRRAESKDPSEGCNCPKFPSDGRSGECCNCYTHNTRKRKRLYSWQRRSKKKQVC--SVDESSAEWSKLNG
Zea mays
NP----------ERSQ-----------IIYGGYANNSKVACSELPLTNGPIK------------------------CSNLDNQNSRKRKRLYKWQRLKKQKQIFPSSEDKSLTSQSEIST
Ostreococcus tauri RE----------------------------ERSSERGADANDSTAVKSKFTP------------------------TKQLTLNPFISSVDVEEVIRLSDVYRASQVSVDEDDGTTREPST
370 380 390 400 410 420 430 440 450 460 470 480
....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|
structures
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Arabidopsis thaliana KVSTGND-----------------------------------------------------------------------------------------EMNLHIGINGSLTDFVKQAKQVKR
Phragmipedium longifolium DLGDGNSVGIHELSLSQDAEAINNEKSCSNNAEKKTNGPLAS--------------------TSAENNGHAPLLMLDNPPDKKSHMGSLGSQS-HLEMNSHCFHGFKLGTAGKVATDDKI
Scilla peruviana ------------------------------------------------------------------------------------------------KLTSHCCYFCALESSDKDAAEFQI
Hosta rectifolia DMMDQNLAGIPEVSVLQDAEAVNNEKSNFVHSEEMYHGNLIL--------------------SSDENNQHLPTVILDVEPQRESQMGRLDIHSHSEKMTSQCFCCSILRTSQKAAMEDQI
Oryza sativa
SNFNMSNGPSENLAGKMNDQAQSVELTVDNTSLARSNDDSSSEIKVINATILSSEKSPCSVFDIRGSQGLSCHYSLSEVQYQSTCPQVGPSSYLHLNSCSICFNCIISNASKHLSLDSLI
Zea mays
NGFGVHDVLLEDLCATVKDKSQFLEPTVDNDSLAMN---------------------------IRTSQCN------STSRIQSTSPQVGLPNFMHLNNGLICFNCLMLNSSKRVSVDLLI
Ostreococcus tauri AMAETSSTTVEVSKESEVKKKPYRKPSWLRKRIAKRN-----------------------------------------------VQVKEVPTTATLGKVVNRSSSASRGNEVKIANTVYD
490 500 510 520 530 540 550 560 570 580 590 600
....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|
structures
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Arabidopsis thaliana NKN-FKFGLSETYSVIPPNHILKTLRPNCSDSKLLMNHIFGEVN-------VWSTTPSHGKGNCPSGSICLYHSLLKSLKNLIGKTKSSHLKMLLDKHCPVLLLQEDALKSGTTS-----
Phragmipedium longifolium NRRRMFYNTSWSSSVFQKDHILNQVKPDGPGAVLLLEHIFGLS-------IKDFRACSCHDGASASSSDCSYHCLLGLLKSLIRNSQNCLHKKMLRKCCPSTILKKYKKDGRGSASEVED
Scilla peruviana NRRQIFYNTWSCYSTFPAWHIMNKVKPNNSGAALLMKHIFGMS-------NEDFQSCVNHGGLCTSNSNCLYRYLLVLLKSLIRNAQHCEHKKLFLKHCPFPTSELYRKDNGGYEAGERK
Hosta rectifolia NRKSIFYKTVSSYSIFPRRHILNRVKPDNSGAAFLMKHIFGFS-------NEDFHSCIHRSGLGAKNSNCLNHYLLGLLKSLIRNAQHCHYKKLLLRHCPLPTYEQYSKDDKG-------
Oryza sativa
SRNGIFYNRRTTYSVFHCKHILSKRK--RPDALSLVKHIFGINSC-----CASLLKYNCHESTIR-KSNCLCCWLPKSIKNLIRNSKRCQYKKLFLKHCSVKCKVAPD------------
Zea mays
SRHTIFYNRKTSYNVFHGNHILNKRK--IPDALSLIIHIFGFKGC-----CAKLLKCNCHVSTTT-NSNCMCLSLPKLMNKLIRNSKRCQYRKLFLKHCPVNSKCAAD------------
Ostreococcus tauri RGVFMFRSSFTKKPGLPAGHALKSGGSSVRAARRLYLAIFKTKKLTKTSSIHKTRRAIRHANSTYRLPRKFRMSLLPALQAMIEGERRCAYSRLLNRRAPMPRKLMVS------------
610 620 630 640 650 660 670 680 690 700 710 720
....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|
structures
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|---------------QFP~motif-----------------------|~~~~~~~~~~~~~~~~~~~~~
Arabidopsis thaliana ---------------QSSRRQKADKLPHGSSSS------QTGKPKCPSVEERKLYCTNDQVVSFIWAICRYIVPESLLGTTHQMRVLRKNIAWFVSRRRNEKCTVNQFLHKVKPSDFPFF
Phragmipedium longifolium ERSSSIEKRSTISEQSSCNLICRSPIVTNGKLQSEQLVGGTSRLCASKSEIANCHFKYDQVVSFIWSVTRRITPVDFLGDASSMRALISSIAKFVALGIYEDFSLDQCLYKLHISRYKFF
Scilla peruviana SFSVLKYDKKFIHMQPSSSRARAESHCLPGINLEIEKV-CEKKLSDSQIDLAESYSTHHQVVSFIWAVIRSIVPPDLLGDRSIWRALRLNISKFVGLQRFEMFDLSQCLHRLESSQPPFL
Hosta rectifolia ----------------STSEVVEERFSL-----------IEREQVRPQFDPIECDARYQQVVSFIWASTRSIVPSDLLGDSCNWRALRSNISKFVGLRRYESFSLSQCTHGLETSRYSFL
Oryza sativa
---------------VTKNDG-KAHYPPG----------GKAAYYDRSFSRLEAYSTHQQVASFVWAVLKRIVPKPLLGNFFGKRSLRTNIWKFIKLRRFETFQLSDCIGDLKVSHYSWL
Zea mays
---------------VAKNHNNKAHFLIG----------GKSAYYDQSYVQLEAYSTHQQVVSFIWAVLTRIIPEPLLGNSSSKRSLRINIWKFIKLRRFESFCLSDCIGELKVSHYSWL
Ostreococcus tauri ---------------------------------------SSRVDNADADSLLSAYTSPRQVVAFVWDVIERIVPDALLGSSHTRGSLRATIRRIVSMRRYERITLHEVMQGIRTSDFTCF
730 740 750 760 770 780 790 800 810 820 830 840
....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|
structures
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|------------------Motif~T----------------------|~~~~~|-------------Motif
Arabidopsis thaliana ARKELC---------------CMVNGHELQSESIRSTQQMLCTKWISWLFLEIVKKLVHFNFYATESQGGRLNIYYYRKRSWERLISKEISKAL-DGYV--LVDDAEAESSRKKL-----
Phragmipedium longifolium SNLRFSRSFQYKVLKEIWKCKFAKKRLHKSSDIRRVLQHQTLRSWVHWFFSEIVVPLISSSFYVTERQGERNCVFYYPKAVWVRLVRSPIDCLD-GGHY--RLMEYSLVTSIIKARGF--
Scilla peruviana SQIRISDCCCYKLWVCIGNCSCAKEGSCNSSKSKIRLHNRLFRHWIYWLFSSLVVPVISNYFYVTERQFDKLQVFYYPKPVWMKLADNATVYLK-EQNY--EQLNDASYMSIIAKRRF--
Hosta rectifolia SKVRLSDCFCCKVANGVGNCKFAKKGIKISNDVKITLQNHIFQNWIYWFFSSIVVPIISSCFYVTERQSKRHHVFYYPKTVWRKIVDNAINCLK-EQNY--RLLDHASFTYIISKRNF--
Oryza sativa
SNIEFSNCFCS---------AIIGKQTGSSTSAEEQEQKNILHCWISWLFSDIVIPVVRTYFYVTERESKRYDVFYYPKSVWRDLTSNAIASLNKKNFRILRGEPRKAVRHLNCS-----
Zea mays
SNIGFSDCFCS---------ALMEKEIWSSNGSEEEKLQNLLRCWISWMFSDIVIPLVQSYFYVTERESRRYDVLYYPKTVWRNLTSTAIASLNRQNFRILRGTSRKEAIQSCY------
Ostreococcus tauri K---------------------ATTTNKSNAGQAEASQRRMATRWIGWLLEEFIFPIIRAHFYVTDTQLHKNRIFFYRKGIWSRLVTATLQSLE-GTSF--KLLSAREAMTMLDRASVEN
850 860 870 880 890 900 910 920 930 940 950 960
....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|
structures
~1------------||-----------------Motif~2-----------------------|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|----------Motif~A-----
Arabidopsis thaliana ----SKFRFLPKANGVRMVLDFSS--------------------SSRSQSLRDTHAVLKDIQLKEPDVLGSSVFDHDDFYRNLCPYLIHLRSQ--SGELPPLYFVVADVFKAFDSVDQGK
Phragmipedium longifolium --GFSRVRLIPKKHDIRIIANARIPSKL------------IYFYKSINTSLKELHAVLKTIKQEHPQLLGSSVFGYNEIHKEWSQFLPKLRGR--KQKIPNVYIVVADVAKAFDSIDQDK
Scilla peruviana --GFSRVRFLPKKNKMRIVANTKAPCEIKAYDQNKRS----FFVKSVNSSLKELHAILRRVKNENPYALGSSVFGYHDVYQKLYRFHQEIKGA--LLMVPSVYIVVGDVAKAFDSINQDM
Hosta rectifolia --GFSRVRFLPKQKCVRILANTKVPSKIPLHRNNNRKRR-FVFLKSINSSLKELHAILRRIKHEHPQALGSSVFGYDDAYRKLYQFLPKVKEG--SPMMPKVYIVVGDVSKAFDSINQDK
Oryza sativa
----SRVRFLPKAKDMRPLVDLRA--------------------KSKDANLNKCHLIMKKLRDEKPEMFGSSVFDYNNVHQNLSQFISSKRSQ--LMKKLKVYIVVADVSKAFDCVSHDM
Zea mays
---FSTVRFIPKAKDMRPLVNLRA--------------------QSKNALLNNCHLIINKVKDENPDKFGSSVFDYNNVHQNIWHFISSVRSH--LKEKIKIYIVVADVSKAFDCITHDM
Ostreococcus tauri NLGFSNMRFLPKGTGLRPIATLNKPTTFAVKLRKKSPALRVKKFEAINNRLKDVQDILHHEAVSNPDVMGSAVGDYKNVLLRLGPCLRTIRRQRMLGRNIKPCILATDIKGAFDNLPLES
970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080
....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|....|
structures
-----------|~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|------------Mo
Arabidopsis thaliana LLHVIQSFLK-DEYILNRCRLVCCGKRSNWVNKILVSSDKNSNFS--------------RFTSTVPYNALQSIVVDKGENHRVRKKDLMVWIGNMLKNNMLQLDKSFYVQIAGIPQGHRL
Phragmipedium longifolium LLEILKGIVENDRYFLREYTHVVC--TKKCVRTFTDRISCEDHGNN---------NQIIRSKVAARVCSSPSIIIDQGRSQCVDKKTLHSLMAEHLLGNILRIGWRFYLQKVGICQGGSI
Scilla peruviana LVRVMKDIIPKDEYMLRSYAQVIS--TKNRMRIVQDYVAHDAESCS---------NDAIKSEATTRFRSSSAVIIDQGRKKRVKEEELHHLLTEHLKNNILKIGKKFYLQKIGICQGSSI
Hosta rectifolia LVEIMKDIIQKDKYYLRSYARVIS--TTKGIKTFYEQVSSDHSSSS---------NDIINFEALTRLRPSYSVYIDQGTSKCIKKDVLHLLLTEHLKHNILQIGQNFYLQKVGLSQGSSI
Oryza sativa VLKMIDDAFKCDEYTVRKCSKVICNRSKNSLYRFDSNASIGNGNS--------------IYDLSIQLSSGGGIFVDQGTICRILKEQFHHLLYEQIKCNIL